The David H. Koch Institute for Integrative Cancer Research at MITThe David H. Koch Institute for Integrative Cancer Research at MIT

Massachusetts Institute of Technology

National Cancer Institute Cancer Center

Science + Engineering... Conquering Cancer Together

Michael Birnbaum, PhD

Michael Birnbaum is the Eugene Bell Career Development Professor in Tissue Engineering and Assistant Professor of Biological Engineering.

Eugene Bell Career Development Professor in Tissue Engineering

Assistant Professor of Biological Engineering


KI Research Areas of Focus:
Cancer Immunology; Personalized Medicine

“Our research combines protein engineering, structural biology, and bioinformatics to understand and manipulate immune-cell recognition and signaling. We are working to better understand the natural immune response, create novel immune tools and treatments, and develop methods to better study and engineer diverse repertoires of molecules.”

Michael Birnbaum is an assistant professor of biological engineering at MIT. He received his bachelor's degree in chemical and physical biology from Harvard University and his PhD from Stanford University in 2014. There, he worked under K. Christopher Garcia, and studied the molecular mechanisms of T cell receptor recognition, cross-reactivity, and activation. After postdoctoral work in Carla Shatz’s group at Stanford supported by a Helen Hay Whitney Postdoctoral Fellowship, Professor Birnbaum joined MIT and the Koch Institute in 2016. He is the Eugene Bell Career Development Professor in Tissue Engineering.

Further Information

Research Summary

The immune system leverages immense molecular diversity in the T, B, and NK cell receptor repertoires to distinguish between normal cells and cells altered by infection or cancer. This molecular diversity often makes understanding exactly what is recognized during the course of an immune response extremely challenging. As a result, efforts to study antigen recognition have often been limited to working with model antigens.

The Birnbaum group focuses on understanding and manipulating immune responses in the context of cancer and infection. They use a variety of strategies and techniques including protein biochemistry, protein engineering, sequencing, and bioinformatics to 1) identify immune cells of interest, 2) determine the sequences of their antigen receptors, 3) directly determine what the immune response is ‘seeing’ in response to cancer or infection, and 4) answer questions about how the immune system composition and dynamics affect the success or failure of an immune response. This type of systematic, unbiased examination of the antigen recognition repertoire of any given T or NK cell receptor has, until recently, been extremely difficult. With this information, Professor Birnbaum and his team will be able to rationally engineer new methods to more specifically mount a potent immune response.

For more information about Professor Birnbaum’s research, please visit the Birnbaum lab webpage.

Selected Publications:

Rappazzo CG, Birnbaum ME. 2017. Tuning up T-cell receptors. Nat Biotechnol 35: 1145–1146.

Adams JJ*, Narayanan S*, Birnbaum ME*, Sidhu SS, Blevins SJ, Gee MH, Sibener LV, Baker BM, Kranz DM, Garcia KC. 2016. Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity. Nat Immunol 17: 87–94.

ME, Mendoza JL, Sethi DK, Dong S, Glanville J, Dobbins J, Ozkan E, Davis MM, Wucherpfennig KW, Garcia KC. 2014. Deconstructing the peptide-MHC specificity of T cell recognition. Cell 157: 1073–1087.

Birnbaum ME, Berry R, Hsiao Y-S, Chen Z, Shingu-Vazquez MA, Yu X, Waghray D, Fischer S, McCluskey J, Rossjohn J, et al. 2014. Molecular architecture of the αβ T cell receptor-CD3 complex. Proc Natl Acad Sci USA 111: 17576–17581.

Birnbaum ME, Dong S, Garcia KC. 2012. Diversity-oriented approaches for interrogating T-cell receptor repertoire, ligand recognition, and function. Immunol Rev 250: 82–101.

Lupardus PJ*, Birnbaum ME*, Garcia KC. 2010. Molecular basis for shared cytokine recognition revealed in the structure of an unusually high affinity complex between IL-13 and IL-13Ralpha2. Structure 18: 332–342.

Search PubMed for Birnbaum lab Publications

Contact Information

Michael Birnbaum

room 76-353D
phone (617) 715-2355

Birnbaum Lab

phone (617) 715-5686

Administrative Assistant:

Isadora Deese
phone (617) 324-3938