The David H. Koch Institute for Integrative Cancer Research at MITThe David H. Koch Institute for Integrative Cancer Research at MIT

Massachusetts Institute of Technology

National Cancer Institute Cancer Center

Science + Engineering... Conquering Cancer Together

Data Analysis Resources

The Preclinical Imaging & Testing Facility currently has 5 workstations available to users with commercially available and custom build image visualization and analysis software.

Sonic - Workstation 1 (PC/Windows)

Specs:

Processor 3.2 GHz AMD Ryzen Quad-Core
Memory 32 GB 2400 MHz GDDR5
Graphics AMD Radeon (TM) RX 570 4096 MB
Storage 1TB


Software: Amira, Living Image, VevoLab

Positron - Workstation 2 (iMac)

Specs:

Processor 3.4 GHz Intel Core i5
Memory 32 GB 2400 MHz DDR4
Graphics Radeon Pro 570 4096 MB
Storage 1TB


Software: VivoQuant 3, Amide, ImageJ

Photon - Workstation 4 (PC/Windows)

Specs:

Processor Dual Intel Xeon Gold 6136 12 core, 3.0 GHz
Memory 192 GB
Graphics Nvidia Quadro RTX 5000, 6GB
Storage 10TB


Software: Matlab, Julia, MicroView, ImageJ, NRecon

Software

VivoQuant: for user guide click here
Amira: for user guide click here
Amide: for user guide click here
ImageJ: for user guide click here
Osirix: Printed user guide of the full version of the software is available at 76-188
MicroView: for user guide click here
Matlab & Julia
Paravision
NRecon

For reserving time in any of the workstations please use iLabs

To get log in credentials please contact the facility’s staff

For data management in these workstations, users will be provided with specific instructions as part of their training.