The David H. Koch Institute for Integrative Cancer Research at MITThe David H. Koch Institute for Integrative Cancer Research at MIT

Massachusetts Institute of Technology

National Cancer Institute Cancer Center

Science + Engineering... Conquering Cancer Together

Progress: October 2012

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Publications Citing Intramural Faculty

*Indicates publications for which a KI intramural faculty member is senior author

1.  Critical role for lysyl oxidase in mesenchymal stem cell-driven breast cancer malignancy
El-Haibi CP, Bell GW, Zhang J, Collmann AY, Wood D, Scherber CM, Csizmadia E, Mariani O, Zhu C, Campagne A, Toner M, Bhatia SN, Irimia D, Vincent-Salomon A, Karnoub AE
Publication: Proceedings of the National Academy of Sciences of the United States of America
DOI: 10.1073/pnas.1206653109
E-Publication Date: October 2, 2012 

*2.  Microfluidic technologies for accelerating the clinical translation of nanoparticles
Valencia PM, Farokhzad OC, Karnik R, Langer R
Publication: Nature Nanotechnology
DOI: 10.1038/nnano.2012.168
E-Publication Date: October 8, 2012

3.  Prolonged nerve blockade delays the onset of neuropathic pain
Shankarappa SA, Tsui JH, Kim KN, Reznor G, Dohlman JC, Langer R, Kohane DS
Publication: Proceedings of the National Academy of Sciences of the United States of America
DOI: 10.1073/pnas.1214634109
E-Publication Date: October 8, 2012

*4.  A combinatorial extracellular matrix platform identifies cell-extracellular matrix interactions that correlate with metastasis
Reticker-Flynn NE, Malta DF, Winslow MM, Lamar JM, Xu MJ, Underhill GH, Hynes RO, Jacks TE, Bhatia SN
Publication: Nature Communications
DOI: 10.1038/ncomms2128
E-Publication Date: October 9, 2012

*5.  Bioengineering methods for analysis of cells in vitro
Underhill GH, Peter G, Chen CS, Bhatia SN
Publication: Annual review of cell and developmental biology
DOI: 10.1146/annurev-cellbio-101011-155709
E-Publication Date: October 13, 2012

*6.  A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails
Wilusz JE, Jnbaptiste CK, Lu LY, Kuhn CD, Joshua-Tor L, Sharp PA
Publication: Genes and Development
DOI: 10.1101/gad.204438.112
E-Publication Date: October 16, 2012

7.  Synergistic cytotoxicity of irinotecan and cisplatin in dual-drug targeted polymeric nanoparticles
Valencia PM, Pridgen EM, Perea B, Gadde S, Sweeney C, Kantoff PW, Bander NH, Lippard SJ, Langer R, Karnik R, Farokhzad OC
Publication: Nanomedicine
DOI: 10.2217/nnm.12.134
E-Publication Date: October 17, 2012

*8.  GM-CSF and IL-4 Stimulate Antibody Responses in Humanized Mice by Promoting T, B, and Dendritic Cell Maturation
Chen Q, He F, Kwang J, Chan JK, Chen J
Publication: Journal of Immunology
DOI: 10.4049/jimmunol.1201789
E-Publication Date: October 22, 2012

*9.  Rationally designed tumor-penetrating nanocomplexes
Karagiannis ED, Alabi CA, Anderson DG
Publication: ACS Nano
DOI: 10.1021/nn304707b
E-Publication Date: October 23, 2012

10.  DNA nanotherapy for pre-neoplastic cervical lesions
Peng W, Dunton C, Holtz D, Parva M, Stampler K, Forwood M, Gogoi R, Lace MJ, Anderson DG, Sawicki JA
Publication: Gynecologic Oncology
DOI: 10.1016/j.ygyno.2012.10.018
E-Publication Date: October 23, 2012

11.  Tissue Engineering: Controlling Spatial Organization of Multiple Cell Types in Defined 3D Geometries
Tekin H, Sanchez JG, Landeros C, Dubbin K, Langer R, Khademhosseini A
Publication: Advanced Materials
DOI: 10.1002/adma.201290252
E-Publication Date: October 26, 2012

*12.  PARP16 is a tail-anchored endoplasmic reticulum protein required for the PERK- and IRE1α-mediated unfolded protein response
Jwa M, Chang P
Publication: Nature Cell Biology
DOI: 10.1038/ncb2593
E-Publication Date: October 28, 2012

13.  Quick-release medical tape
Laulicht B, Langer R, Karp JM
Publication: Proceedings of the National Academy of Sciences of the United States of America
DOI: 10.1073/pnas.1216071109
E-Publication Date: October 29, 2012

14.  Regeneration of Alveolar Type I and II Cells from Scgb1a1-Expressing Cells following Severe Pulmonary Damage Induced by Bleomycin and Influenza
Zheng D, Limmon GV, Yin L, Leung NH, Yu H, Chow VT, Chen J
Publication: PLoS One
DOI: 10.1371/journal.pone.0048451
E-Publication Date: October 31, 2012

Publications Citing Extramural Faculty

*Indicates publications for which a KI extramural faculty member is senior author

*15.  Metabolic and Neuropsychiatric Effects of Calorie Restriction and Sirtuins
Libert S, Guarente L
Publication: Annual Review of Physiology
DOI: 10.1146/annurev-physiol-030212-183800
E-Publication Date: October 1, 2012

16.  Natural tissue microenvironmental conditions modulate adhesive material performance
Oliva N, Shitreet S, Abraham E, Stanley B, Edelman ER, Artzi N
Publication: Langmuir
DOI: 10.1021/la303155p
E-Publication Date: October 8, 2012

*17.  Regulation of mammalian cell differentiation by long non-coding RNAs
Hu W, Alvarez-Dominguez JR, Lodish HF
Publication: EMBO Reports
DOI: 10.1038/embor.2012.145
E-Publication Date: October 16, 2012

*18.  The limitations of simple gene set enrichment analysis assuming gene independence
Tamayo P, Steinhardt G, Liberzon A, Mesirov JP
Publication: Statistical Methods in Medical Research
DOI: 10.1177/0962280212460441
E-Publication Date: October 14, 2012

*19.  Normalization and Statistical Analysis of Multiplexed Bead-Based Immunoassay Data Using Mixed-Effects Modeling
Clarke DC, Morris MK, Lauffenburger DA
Publication: Molecular and Cellular Proteomics
DOI: 10.1074/mcp.M112.018655
E-Publication Date: October 15, 2012

20.  Protein array patterning by diffusive gel stamping
Anwar M, Gupta PB, Palaniapan R, Matsudaira P
Publication: PLoS One
DOI: 10.1371/journal.pone.0046382
E-Publication Date: October 10, 2012

21.  Autoantibodies produced at the site of tissue damage provide evidence of humoral autoimmunity in inclusion body myositis
Ray A, Amato AA, Bradshaw EM, Felice KJ, Dicapua DB, Goldstein JM, Lundberg IE, Nowak RJ, Ploegh HL, Spooner E, Wu Q, Willis SN, O'Connor KC
Publication: PLoS One
DOI: 10.1371/journal.pone.0046709
E-Publication Date: October 5, 2012

*22.  Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy
Martell JD, Deerinck TJ, Sancak Y, Poulos TL, Mootha VK, Sosinsky GE, Ellisman MH, Ting AY
Publication: Nature Biotechnology
DOI: 10.1038/nbt.2375
E-Publication Date: October 21, 2012

*23.  Revisiting global gene expression analysis
Lovén J, Orlando DA, Sigova AA, Lin CY, Rahl PB, Burge CB, Levens DL, Lee TI, Young RA
Publication: Cell
DOI: 10.1016/j.cell.2012.10.012
E-Publication Date: October 26, 2012

*24.  Physical and structural properties of [Cu(BOT1)Cl]Cl, a fluorescent imaging probe for HNO
Royzen M, Wilson JJ, Lippard SJ
Publication: Journal of Inorganic Biochemistry
DOI: 10.1016/j.jinorgbio.2012.08.025
E-Publication Date: October 5, 2012

*25.  The effect of substrate modulus on the growth and function of matrix-embedded endothelial cells
Murikipudi S, Methe H, Edelman ER
Publication: Biomaterials
DOI: 10.1016/j.biomaterials.2012.09.079
E-Publication Date: October 24, 2012

*26.  Reversible binding of nitric oxide to an Fe(iii) complex of a tetra-amido macrocycle
Pluth MD, Lippard SJ
Publication: Chemical Communications
DOI: 10.1039/C2CC37221E
E-Publication Date: October 26, 2012

27.  An integrated map of genetic variation from 1,092 human genomes
The 1000 Genomes Project Consortium
Publication: Nature
DOI: 10.1038/nature11632
E-Publication Date: October 31, 2012